{
  "_id": "6a2166b7cd65a98ecbd35ce4",
  "Package": "INLAjoint",
  "Type": "Package",
  "Title": "Multivariate Joint Modeling for Longitudinal and Time-to-Event\nOutcomes with 'INLA'",
  "Version": "26.6.2",
  "Authors@R": "c(\nperson(\"Denis\", \"Rustand\", email = \"INLAjoint@gmail.com\",\nrole = c(\"cre\", \"aut\"),\ncomment = c(ORCID = \"0000-0001-9708-5220\")),\nperson(\"Elias\", \"Teixeira Krainski\", email = \"elias.krainski@kaust.edu.sa\",\nrole = \"aut\",\ncomment = c(ORCID = \"0000-0002-7063-2615\")),\nperson(\"Haavard\", \"Rue\", email = \"haavard.rue@kaust.edu.sa\",\nrole = \"aut\",\ncomment = c(ORCID = \"0000-0002-0222-1881\")),\nperson(\"Janet\", \"van Niekerk\", email = \"janet.vanniekerk@kaust.edu.sa\",\nrole = \"aut\",\ncomment = c(ORCID = \"0000-0002-4334-2057\"))\n)",
  "Description": "Estimation of joint models for multivariate longitudinal\nmarkers (with various distributions available) and survival\noutcomes (possibly accounting for competing risks) with\nIntegrated Nested Laplace Approximations (INLA). The flexible\nand user friendly function joint() facilitates the use of the\nfast and reliable inference technique implemented in the 'INLA'\npackage for joint modeling. More details are given in the help\npage of the joint() function (accessible via ?joint in the R\nconsole) and the vignette associated to the joint() function\n(accessible via vignette(\"INLAjoint\") in the R console).",
  "License": "GPL-3",
  "URL": "https://github.com/DenisRustand/INLAjoint",
  "BugReports": "https://github.com/DenisRustand/INLAjoint/issues",
  "Encoding": "UTF-8",
  "LazyData": "true",
  "Additional_repositories": "https://inla.r-inla-download.org/R/testing",
  "BuildVignettes": "true",
  "VignetteBuilder": "R.rsp",
  "Maintainer": "Denis Rustand <INLAjoint@gmail.com>",
  "Config/roxygen2/version": "8.0.0",
  "Repository": "https://denisrustand.r-universe.dev",
  "Date/Publication": "2026-06-04 08:40:51 UTC",
  "RemoteUrl": "https://github.com/denisrustand/inlajoint",
  "RemoteRef": "HEAD",
  "RemoteSha": "249eaaf693c90051f0c5e13e450ffb22d1382f20",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-06-04 11:28:18 UTC",
    "User": "root"
  },
  "Author": "Denis Rustand [cre, aut] (ORCID:\n<https://orcid.org/0000-0001-9708-5220>),\nElias Teixeira Krainski [aut] (ORCID:\n<https://orcid.org/0000-0002-7063-2615>),\nHaavard Rue [aut] (ORCID: <https://orcid.org/0000-0002-0222-1881>),\nJanet van Niekerk [aut] (ORCID:\n<https://orcid.org/0000-0002-4334-2057>)",
  "MD5sum": "2dba977453a95a78f5bfdcac800fd341",
  "_user": "denisrustand",
  "_type": "src",
  "_file": "INLAjoint_26.6.2.tar.gz",
  "_fileid": "61b5052fecbd143275fbddb035865f22337f0296ece4e2507094c87c50a0bf72",
  "_filesize": 888956,
  "_sha256": "61b5052fecbd143275fbddb035865f22337f0296ece4e2507094c87c50a0bf72",
  "_created": "2026-06-04T11:28:18.000Z",
  "_published": "2026-06-04T11:51:19.240Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 79508922303,
      "time": 213,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7410312442"
    },
    {
      "job": 79508922271,
      "time": 211,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7410312068"
    },
    {
      "job": 79508922230,
      "time": 212,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7410647540"
    },
    {
      "job": 79508922254,
      "time": 189,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7410591692"
    },
    {
      "job": 79508208320,
      "time": 266,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7410244564"
    },
    {
      "job": 79508922234,
      "time": 177,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7410300138"
    },
    {
      "job": 79508922296,
      "time": 196,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7410306956"
    },
    {
      "job": 79508922251,
      "time": 178,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7410300759"
    },
    {
      "job": 79508922269,
      "time": 194,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7410306575"
    }
  ],
  "_buildurl": "https://github.com/r-universe/denisrustand/actions/runs/26948721983",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/denisrustand/inlajoint",
  "_commit": {
    "id": "249eaaf693c90051f0c5e13e450ffb22d1382f20",
    "author": "DenisRustand <44909963+DenisRustand@users.noreply.github.com>",
    "committer": "DenisRustand <44909963+DenisRustand@users.noreply.github.com>",
    "message": "Update CRAN version\n",
    "time": 1780562451
  },
  "_maintainer": {
    "name": "Denis Rustand",
    "email": "inlajoint@gmail.com",
    "orcid": "0000-0001-9708-5220"
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.6",
      "role": "Depends"
    },
    {
      "package": "utils",
      "role": "Depends"
    },
    {
      "package": "stats",
      "role": "Depends"
    },
    {
      "package": "numDeriv",
      "role": "Imports"
    },
    {
      "package": "reformulas",
      "role": "Imports"
    },
    {
      "package": "ggplot2",
      "role": "Imports"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "Matrix",
      "role": "Imports"
    },
    {
      "package": "nlme",
      "role": "Imports"
    },
    {
      "package": "data.table",
      "role": "Imports"
    },
    {
      "package": "INLA",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "splines",
      "role": "Suggests"
    },
    {
      "package": "graphics",
      "role": "Suggests"
    },
    {
      "package": "grDevices",
      "role": "Suggests"
    },
    {
      "package": "R.rsp",
      "role": "Suggests"
    },
    {
      "package": "survival",
      "role": "Suggests"
    },
    {
      "package": "JMbayes2",
      "role": "Suggests"
    },
    {
      "package": "rstanarm",
      "role": "Suggests"
    },
    {
      "package": "frailtypack",
      "role": "Suggests"
    },
    {
      "package": "smcure",
      "role": "Suggests"
    },
    {
      "package": "fmesher",
      "role": "Suggests"
    },
    {
      "package": "MASS",
      "role": "Suggests"
    },
    {
      "package": "sn",
      "role": "Suggests"
    }
  ],
  "_owner": "denisrustand",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-28",
      "n": 2
    },
    {
      "week": "2025-33",
      "n": 1
    },
    {
      "week": "2025-34",
      "n": 5
    },
    {
      "week": "2025-35",
      "n": 4
    },
    {
      "week": "2025-41",
      "n": 1
    },
    {
      "week": "2025-46",
      "n": 1
    },
    {
      "week": "2025-47",
      "n": 2
    },
    {
      "week": "2026-02",
      "n": 1
    },
    {
      "week": "2026-07",
      "n": 2
    },
    {
      "week": "2026-08",
      "n": 2
    },
    {
      "week": "2026-17",
      "n": 1
    },
    {
      "week": "2026-23",
      "n": 1
    }
  ],
  "_tags": [
    {
      "name": "v25.7.7",
      "date": "2025-07-07"
    },
    {
      "name": "v25.7.8",
      "date": "2025-07-07"
    },
    {
      "name": "v25.8.15",
      "date": "2025-08-15"
    },
    {
      "name": "v25.8.19",
      "date": "2025-08-19"
    },
    {
      "name": "v25.8.20",
      "date": "2025-08-20"
    },
    {
      "name": "v25.8.20.1",
      "date": "2025-08-20"
    },
    {
      "name": "v25.8.20.2",
      "date": "2025-08-20"
    },
    {
      "name": "v25.8.25",
      "date": "2025-08-25"
    },
    {
      "name": "v25.8.25.1",
      "date": "2025-08-25"
    },
    {
      "name": "v25.8.28",
      "date": "2025-08-28"
    },
    {
      "name": "v25.8.31",
      "date": "2025-08-31"
    },
    {
      "name": "v25.10.7",
      "date": "2025-10-07"
    },
    {
      "name": "v25.11.10",
      "date": "2025-11-10"
    },
    {
      "name": "v25.11.19",
      "date": "2025-11-10"
    },
    {
      "name": "v25.11.19.1",
      "date": "2025-11-19"
    },
    {
      "name": "v25.11.19.2",
      "date": "2025-11-19"
    },
    {
      "name": "v26.1.6",
      "date": "2025-11-19"
    },
    {
      "name": "v26.1.6.1",
      "date": "2026-01-06"
    },
    {
      "name": "v26.2.12",
      "date": "2026-02-12"
    },
    {
      "name": "v26.2.13",
      "date": "2026-02-13"
    },
    {
      "name": "v26.2.17",
      "date": "2026-02-17"
    },
    {
      "name": "v26.2.18",
      "date": "2026-02-18"
    },
    {
      "name": "v26.4.20",
      "date": "2026-04-20"
    },
    {
      "name": "v26.6.2",
      "date": "2026-06-04"
    }
  ],
  "_stars": 23,
  "_contributors": [
    {
      "user": "denisrustand",
      "count": 214,
      "uuid": 44909963
    },
    {
      "user": "eliaskrainski",
      "count": 8,
      "uuid": 3436870
    },
    {
      "user": "hrue",
      "count": 3,
      "uuid": 7469447
    },
    {
      "user": "janetvn1201",
      "count": 1,
      "uuid": 58976783
    }
  ],
  "_userbio": {
    "uuid": 44909963,
    "type": "user",
    "name": "DenisRustand"
  },
  "_downloads": {
    "count": 199,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/INLAjoint"
  },
  "_devurl": "https://github.com/denisrustand/inlajoint",
  "_searchresults": 58,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/INLAjoint.html",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/denisrustand/inlajoint",
  "_realowner": "denisrustand",
  "_cranurl": true,
  "_releases": [
    {
      "version": "23.10.28",
      "date": "2023-10-28"
    },
    {
      "version": "24.2.4",
      "date": "2024-02-04"
    },
    {
      "version": "24.3.25",
      "date": "2024-03-25"
    },
    {
      "version": "25.11.10",
      "date": "2025-11-10"
    },
    {
      "version": "26.6.2",
      "date": "2026-06-02"
    }
  ],
  "_exports": [
    "INLAjoint",
    "joint",
    "joint.compare",
    "joint.rerun",
    "joint.run",
    "score_predictions",
    "setup_S_model"
  ],
  "_datasets": [
    {
      "name": "LongMS",
      "title": "Simulated univariate longitudinal dataset",
      "object": "LongMS",
      "class": [
        "data.frame"
      ],
      "fields": [
        "id",
        "time",
        "X",
        "y"
      ],
      "rows": 317,
      "table": true,
      "tojson": true
    },
    {
      "name": "Longsim",
      "title": "Simulated multivariate longitudinal dataset",
      "object": "Longsim",
      "class": [
        "data.frame"
      ],
      "fields": [
        "Id",
        "time",
        "ctsX",
        "binX",
        "Y1",
        "Y2",
        "Y3"
      ],
      "rows": 96,
      "table": true,
      "tojson": true
    },
    {
      "name": "SurvMS",
      "title": "Simulated multi-state survival dataset",
      "object": "SurvMS",
      "class": [
        "list"
      ],
      "fields": [],
      "table": true,
      "tojson": true
    },
    {
      "name": "Survsim",
      "title": "Simulated competing risks survival dataset",
      "object": "Survsim",
      "class": [
        "data.frame"
      ],
      "fields": [
        "Id",
        "deathTimes",
        "ctsX",
        "binX",
        "Event1",
        "Event2",
        "Event3"
      ],
      "rows": 15,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "coef.INLAjoint",
      "title": "Extracts model coefficients from a given model fitted with INLAjoint",
      "topics": [
        "coef.INLAjoint"
      ]
    },
    {
      "page": "family.INLAjoint",
      "title": "Extracts family from a given model fitted with INLAjoint",
      "topics": [
        "family.INLAjoint"
      ]
    },
    {
      "page": "fitted.INLAjoint",
      "title": "Extracts fitted values from a given model fitted with INLAjoint",
      "topics": [
        "fitted.INLAjoint"
      ]
    },
    {
      "page": "fixef.INLAjoint",
      "title": "Extracts fixed effects values from a given model fitted with INLAjoint",
      "topics": [
        "fixef.INLAjoint"
      ]
    },
    {
      "page": "formula.INLAjoint",
      "title": "Extracts formula from a given model fitted with INLAjoint",
      "topics": [
        "formula.INLAjoint"
      ]
    },
    {
      "page": "INLAjoint",
      "title": "INLAjoint",
      "topics": [
        "INLAjoint"
      ]
    },
    {
      "page": "INLAjoint.ginv",
      "title": "Setup ginv",
      "topics": [
        "INLAjoint.ginv"
      ]
    },
    {
      "page": "INLAjoint.object",
      "title": "Fitted 'joint' object",
      "topics": [
        "INLAjoint.object"
      ]
    },
    {
      "page": "INLAjoint.rw",
      "title": "Setup rw",
      "topics": [
        "INLAjoint.rw"
      ]
    },
    {
      "page": "INLAjoint.rw2",
      "title": "Setup rw2",
      "topics": [
        "INLAjoint.rw2"
      ]
    },
    {
      "page": "INLAjoint.scopy.define",
      "title": "Setup scopy",
      "topics": [
        "INLAjoint.scopy.define"
      ]
    },
    {
      "page": "joint",
      "title": "Fit a multivariate joint model for longitudinal and/or survival data",
      "topics": [
        "joint"
      ]
    },
    {
      "page": "joint.compare",
      "title": "Compare INLAjoint models",
      "topics": [
        "joint.compare"
      ]
    },
    {
      "page": "joint.rerun",
      "title": "Rerun a model fitted with INLAjoint",
      "topics": [
        "joint.rerun"
      ]
    },
    {
      "page": "joint.run",
      "title": "Run a model fitted with INLAjoint",
      "topics": [
        "joint.run"
      ]
    },
    {
      "page": "logLik.INLAjoint",
      "title": "Extracts log-likelihood value from a given model fitted with INLAjoint",
      "topics": [
        "logLik.INLAjoint"
      ]
    },
    {
      "page": "LongMS",
      "title": "Simulated univariate longitudinal dataset",
      "topics": [
        "LongMS"
      ]
    },
    {
      "page": "Longsim",
      "title": "Simulated multivariate longitudinal dataset",
      "topics": [
        "Longsim"
      ]
    },
    {
      "page": "nobs.INLAjoint",
      "title": "Extracts number of observations of each composant from a given model fitted with INLAjoint",
      "topics": [
        "nobs.INLAjoint"
      ]
    },
    {
      "page": "plot.INLAjoint",
      "title": "Plot the output from a multivariate joint model for longitudinal and/or survival data",
      "topics": [
        "plot.INLAjoint"
      ]
    },
    {
      "page": "plot.score_predictions",
      "title": "Plot method for score_predictions objects",
      "topics": [
        "plot.score_predictions"
      ]
    },
    {
      "page": "predict.INLAjoint",
      "title": "Computes predictions for a given model fitted with INLAjoint",
      "topics": [
        "predict.INLAjoint"
      ]
    },
    {
      "page": "print.plot.INLAjoint",
      "title": "Prints plot the output from a multivariate joint model for longitudinal and/or survival data",
      "topics": [
        "print.plot.INLAjoint"
      ]
    },
    {
      "page": "print.score_predictions",
      "title": "Print method for score_predictions objects",
      "topics": [
        "print.score_predictions"
      ]
    },
    {
      "page": "ranef.INLAjoint",
      "title": "Extracts random effects values from a given model fitted with INLAjoint",
      "topics": [
        "ranef.INLAjoint"
      ]
    },
    {
      "page": "score_predictions",
      "title": "Compute time-dependent predictive accuracy metrics (AUC and Brier Score)",
      "topics": [
        "score_predictions"
      ]
    },
    {
      "page": "setup_FE_model",
      "title": "Setup fixed effects part for longitudinal marker k",
      "topics": [
        "setup_FE_model"
      ]
    },
    {
      "page": "setup_RE_model",
      "title": "Setup random effects part for longitudinal marker k",
      "topics": [
        "setup_RE_model"
      ]
    },
    {
      "page": "setup_S_model",
      "title": "Setup survival part for outcome m",
      "topics": [
        "setup_S_model"
      ]
    },
    {
      "page": "setup_Y_model",
      "title": "Setup outcome for longitudinal marker",
      "topics": [
        "setup_Y_model"
      ]
    },
    {
      "page": "SurvMS",
      "title": "Simulated multi-state survival dataset",
      "topics": [
        "SurvMS"
      ]
    },
    {
      "page": "Survsim",
      "title": "Simulated competing risks survival dataset",
      "topics": [
        "Survsim"
      ]
    }
  ],
  "_readme": "https://github.com/denisrustand/inlajoint/raw/HEAD/README.md",
  "_rundeps": [
    "cli",
    "cpp11",
    "data.table",
    "farver",
    "ggplot2",
    "glue",
    "gtable",
    "isoband",
    "labeling",
    "lattice",
    "lifecycle",
    "Matrix",
    "nlme",
    "numDeriv",
    "R6",
    "rbibutils",
    "RColorBrewer",
    "Rdpack",
    "reformulas",
    "rlang",
    "S7",
    "scales",
    "vctrs",
    "viridisLite",
    "withr"
  ],
  "_vignettes": [
    {
      "source": "INLAjoint.pdf.asis",
      "filename": "INLAjoint.pdf",
      "title": "INLAjoint",
      "engine": "R.rsp::asis",
      "headings": [],
      "created": "2022-04-01 09:56:46",
      "modified": "2022-04-01 09:56:46",
      "commits": 1
    }
  ],
  "_score": 7.380428334683836,
  "_indexed": true,
  "_nocasepkg": "inlajoint",
  "_universes": [
    "denisrustand"
  ],
  "_previous": "26.4.20",
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "26.6.2",
      "date": "2026-06-04T11:31:15.000Z",
      "distro": "noble",
      "commit": "249eaaf693c90051f0c5e13e450ffb22d1382f20",
      "fileid": "d0477739e832641de67634f861e983676e3a6fa0aa829f557182d3fff9e72c28",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/denisrustand/actions/runs/26948721983"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "26.6.2",
      "date": "2026-06-04T11:31:14.000Z",
      "distro": "noble",
      "commit": "249eaaf693c90051f0c5e13e450ffb22d1382f20",
      "fileid": "6ec929bd477d027dcd8d709ef9a76476a2d7791a34e60d1e6536a655043a5672",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/denisrustand/actions/runs/26948721983"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "26.6.2",
      "date": "2026-06-04T11:49:34.000Z",
      "commit": "249eaaf693c90051f0c5e13e450ffb22d1382f20",
      "fileid": "6a3427d3c48c7b2f54fb4e2e7a9476b3a1e3867a55f1b108579bb96adf4aefa2",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/denisrustand/actions/runs/26948721983"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "26.6.2",
      "date": "2026-06-04T11:46:41.000Z",
      "commit": "249eaaf693c90051f0c5e13e450ffb22d1382f20",
      "fileid": "2bb3fe98c47e85b5e34d98d4b9449af3ebc6b8d787b753add3da1467910ad320",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/denisrustand/actions/runs/26948721983"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "26.6.2",
      "date": "2026-06-04T11:31:43.000Z",
      "commit": "249eaaf693c90051f0c5e13e450ffb22d1382f20",
      "fileid": "7b882c6f68467d9883bb2e132d868c5c0aae3abc16e3bc50b698e3d67b86f3c3",
      "status": "success",
      "buildurl": "https://github.com/r-universe/denisrustand/actions/runs/26948721983"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "26.6.2",
      "date": "2026-06-04T11:30:30.000Z",
      "commit": "249eaaf693c90051f0c5e13e450ffb22d1382f20",
      "fileid": "394250489f599995ca1cca288ca571e8dd5cda19fed9809c87900feaf91fef80",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/denisrustand/actions/runs/26948721983"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "26.6.2",
      "date": "2026-06-04T11:30:15.000Z",
      "commit": "249eaaf693c90051f0c5e13e450ffb22d1382f20",
      "fileid": "e3374bd69af77180f45ec979524cf2b5723cd0600e766e14b61cecfa7a3d6a2c",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/denisrustand/actions/runs/26948721983"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "26.6.2",
      "date": "2026-06-04T11:30:36.000Z",
      "commit": "249eaaf693c90051f0c5e13e450ffb22d1382f20",
      "fileid": "240a3b1a9fed70f15bb3dc3884b6f12ba4c22a7e0e8ecfa86dedca0e928050e9",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/denisrustand/actions/runs/26948721983"
    }
  ]
}