Package: INLAjoint 24.9.25

Denis Rustand

INLAjoint: Multivariate Joint Modeling for Longitudinal and Time-to-Event Outcomes with 'INLA'

Estimation of joint models for multivariate longitudinal markers (with various distributions available) and survival outcomes (possibly accounting for competing risks) with Integrated Nested Laplace Approximations (INLA). The flexible and user friendly function joint() facilitates the use of the fast and reliable inference technique implemented in the 'INLA' package for joint modeling. More details are given in the help page of the joint() function (accessible via ?joint in the R console) and the vignette associated to the joint() function (accessible via vignette("INLAjoint") in the R console).

Authors:Denis Rustand [cre, aut], Elias Teixeira Krainski [aut], Haavard Rue [aut], Janet van Niekerk [aut]

INLAjoint_24.9.25.tar.gz
INLAjoint_24.9.25.zip(r-4.5)INLAjoint_24.9.25.zip(r-4.4)INLAjoint_24.9.25.zip(r-4.3)
INLAjoint_24.9.25.tgz(r-4.4-any)INLAjoint_24.9.25.tgz(r-4.3-any)
INLAjoint_24.9.25.tar.gz(r-4.5-noble)INLAjoint_24.9.25.tar.gz(r-4.4-noble)
INLAjoint_24.9.25.tgz(r-4.4-emscripten)INLAjoint_24.9.25.tgz(r-4.3-emscripten)
INLAjoint.pdf |INLAjoint.html
INLAjoint/json (API)

# Install 'INLAjoint' in R:
install.packages('INLAjoint', repos = c('https://denisrustand.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/denisrustand/inlajoint/issues

Datasets:
  • LongMS - Simulated univariate longitudinal dataset
  • Longsim - Simulated multivariate longitudinal dataset
  • SurvMS - Simulated multi-state survival dataset
  • Survsim - Simulated competing risks survival dataset

On CRAN:

7.15 score 17 stars 31 scripts 235 downloads 4 exports 36 dependencies

Last updated 2 months agofrom:e484f8ac2a. Checks:OK: 6 NOTE: 1. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 25 2024
R-4.5-winOKOct 25 2024
R-4.5-linuxOKOct 25 2024
R-4.4-winOKOct 25 2024
R-4.4-macOKOct 25 2024
R-4.3-winNOTEOct 25 2024
R-4.3-macOKOct 25 2024

Exports:INLAjointjointjoint.rerunsetup_S_model

Dependencies:bootclicolorspacefansifarverggplot2gluegtableisobandlabelinglatticelifecyclelme4magrittrMASSMatrixmgcvminqamunsellmvtnormnlmenloptrnumDerivpillarpkgconfigR6RColorBrewerRcppRcppEigenrlangscalestibbleutf8vctrsviridisLitewithr

INLAjoint

Rendered fromINLAjoint.pdf.asisusingR.rsp::asison Oct 25 2024.

Last update: 2022-04-01
Started: 2022-04-01

Readme and manuals

Help Manual

Help pageTopics
Extracts model coefficients from a given model fitted with INLAjointcoef.INLAjoint
Extracts family from a given model fitted with INLAjointfamily.INLAjoint
Extracts fitted values from a given model fitted with INLAjointfitted.INLAjoint
Extracts fixed effects values from a given model fitted with INLAjointfixef.INLAjoint
Extracts formula from a given model fitted with INLAjointformula.INLAjoint
INLAjointINLAjoint
Setup ginvINLAjoint.ginv
Fitted 'joint' objectINLAjoint.object
Setup rwINLAjoint.rw
Setup rw2INLAjoint.rw2
Setup scopyINLAjoint.scopy.define
Fit a multivariate joint model for longitudinal and/or survival datajoint
Rerun a model fitted with INLAjointjoint.rerun
Extracts log-likelihood value from a given model fitted with INLAjointlogLik.INLAjoint
Simulated univariate longitudinal datasetLongMS
Simulated multivariate longitudinal datasetLongsim
Extracts number of observations of each composant from a given model fitted with INLAjointnobs.INLAjoint
Plot the output from a multivariate joint model for longitudinal and/or survival dataplot.INLAjoint
Computes predictions for a given model fitted with INLAjointpredict.INLAjoint
Prints plot the output from a multivariate joint model for longitudinal and/or survival dataprint.plot.INLAjoint
Extracts random effects values from a given model fitted with INLAjointranef.INLAjoint
Setup fixed effects part for longitudinal marker ksetup_FE_model
Setup random effects part for longitudinal marker ksetup_RE_model
Setup survival part for outcome msetup_S_model
Setup outcome for longitudinal markersetup_Y_model
Simulated multi-state survival datasetSurvMS
Simulated competing risks survival datasetSurvsim